PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002925t1
Common NameTCM_002925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 275aa    MW: 31665.7 Da    PI: 7.5025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002925t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.3e-1921107287
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       Wt qe+l Li+a++e++ +l+rg+lk+ +Weev+  +       +    +++ qC++k+e+l++ry+ +++g  +      s +py++ +ea
  Thecc1EG002925t1  21 WTPQETLNLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcglFDDSAAKTALQCRHKMEKLRRRYRSERQGVASA-----SLWPYYEAMEA 107
                       *************************************998888888999************************984.....68*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1820108No hitNo description
SMARTSM005955.3E-728113IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSYPSPAADP QPAKKPQPLP WTPQETLNLI QAYQEKWYSL KRGQLKASQW EEVAVTVAAR  60
CGLFDDSAAK TALQCRHKME KLRRRYRSER QGVASASLWP YYEAMEALEH GPLPISARPL  120
TSLVPNRGKN FYSENGHKVG NIYDNNDDVV EEDEEDDEEE NQFSKSRSIN YILRRPSVVN  180
RFSGFLSGAR KRVRPEEGGD EDVAVGEENR GAELAVEIKR FAERFMRVER KRMEMMQETE  240
RLRVEMENRR IEMILDSQRK IVDVIASTLG RSRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049769.10.0Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative
TrEMBLA0A061DPA70.0A0A061DPA7_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative
STRINGPOPTR_0002s24480.11e-70(Populus trichocarpa)
STRINGPGSC0003DMT4000517883e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.18e-57Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]